- (1.1) The Four Layers of Data Organization
- (1.2) Tidy Data as a Structural Standard
- (1.3) Portability -- Importing & Exporting Data
- (1.4) Collaborative Data Storage & Access
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- Files and directories
- Hierarchical organizational structure in modern operating systems
- File naming conventions
- Filename extensions (purpose, common types, show/hide settings in OS)
- Path specifications (absolute vs. relative)
- Filesystem format considerations
- Data types
- General framework
- Internal types (storage modes) and data object classes in R
- Basic types of data files
- Plain text vs. binary
- Filename extensions revisited (connection between extensions and file types)
- Flat files (tabular and hierarchical/nested structures)
- Databases (primarily relational; mention of NoSQL models)
- File format selection criteria: When to use CSV vs. RData/RDS vs. Excel vs. databases
- Tidy data principles
- Wickham's tidy data framework
- Long vs. wide tabular formats
- Conversions between formats
- Metadata
- Types and purposes of metadata
- Metadata standards and best practices
- Collaborative data storage
- Shared drives and cloud services
- File locking and concurrent access issues
- Naming conventions for team environments
- Role-based access in research teams
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