# AI Systems & Architecture
<div class="callout" data-callout="info">
<div class="callout-title">Category Overview</div>
<div class="callout-content">
System design patterns, architectural frameworks, and production-ready implementations for AI applications.
</div>
</div>
---
## Topics Covered
<div class="topic-area">
### System Design
- RAG systems
- Agent architectures
- MCP integration
- Tool design
</div>
<div class="topic-area">
### Prompt Engineering
- Advanced techniques
- CoT and ReAct
- Structured outputs
- LLM comparison
</div>
<div class="topic-area">
### Production Systems
- Scalability
- Content automation
- Enterprise AI
- System architecture
</div>
---
## Articles in This Category
**11 articles** • Sorted by most recent
<div class="latest-articles">
### [[AI Systems & Architecture/agentic-content-creation-openai-guide-case-study|Agentic Content Creation: From PDF to Polished Blog in Under a Minute]]
*intermediate • 7 min read*
Technical deep dive into how AI agents, mode switching, and MCP tools transform raw content into polished, publication-ready blog posts.
### [[AI Systems & Architecture/advanced-prompt-engineering-oncology-ds|Advanced Prompt Engineering for Oncology Data Science: Techniques for Robust AI Systems]]
*advanced • 5 min read*
Technical deep dive into advanced prompt engineering techniques (CoT, ReAct, Structured Outputs) tailored for oncology data scientists.
### [[AI Systems & Architecture/agentrxiv-automated-toolkit-selection|AgentRxiv: Enabling Automated Toolkit Selection for AI Agents]]
*intermediate • 3 min read*
Analysis of how AgentRxiv's collaborative research platform revolutionizes automated toolkit selection for AI agents.
### [[AI Systems & Architecture/expert-conductor-prompt-llm-comparison|The Expert Conductor Prompt: A Comparative Analysis of LLM Reasoning Patterns]]
*advanced • 9 min read*
Comparative analysis of how Claude Sonnet 3.7, Gemini 2.5 Pro, and OpenAI o3 respond to the Expert Conductor prompt for complex problem-solving.
### [[AI Systems & Architecture/manus-im-system-architecture|Inside Manus.im: The Elegant Architecture Behind a Powerful AI Agent]]
*advanced • 8 min read*
Technical deep dive into the system architecture of Manus.im, revealing how elegant prompt engineering and tool design enable autonomous capabilities.
### [[AI Systems & Architecture/manus-vs-mymanus-system-architecture|Manus.im vs MyManus: A Technical Deep Dive into AI Agent System Architecture]]
*advanced • 3 min read*
Comprehensive technical comparison of Manus.im and MyManus system architectures, revealing how core components serve different deployment models.
### [[AI Systems & Architecture/ai-agent-platforms-pharma-rd-comparison|AI Agent Platforms for Pharmaceutical R&D: Executive Summary]]
*intermediate • 5 min read*
Strategic comparison of AI agent platforms for pharmaceutical R&D leaders, focusing on regulatory compliance, data security, and workflow integration.
### [[AI Systems & Architecture/agent-architectures-with-mcp|Agent Architectures with Model Context Protocol: A Technical Survey]]
*advanced • 11 min read*
Technical survey of architectural patterns for implementing AI agents with Model Context Protocol, including comparative analysis of frameworks.
### [[AI Systems & Architecture/model-context-protocol-implementation|Implementing Model Context Protocol (MCP) Across AI Coding Assistants]]
*intermediate • 3 min read*
Comprehensive guide to implementing Model Context Protocol (MCP) across different AI coding assistants with practical examples and best practices.
### [[AI Systems & Architecture/custom-modes-quick-start|Creating Custom Modes in Roo Code: A Quick Start Guide]]
*beginner • 3 min read*
Learn how to create and use custom modes in Roo Code to build specialized AI agents for your development workflow.
### [[AI Systems & Architecture/building-markdown-rag-system|Building a Markdown RAG System: A Practical Guide to Document-Grounded AI]]
*intermediate • 3 min read*
Detailed walkthrough of building a Retrieval-Augmented Generation (RAG) system for markdown documents with lightweight implementation.
</div>
---
## Navigation
### Browse Content
- [[index/by-tag|Browse by Tag]]
- [[index/by-date|Browse by Date]]
- [[index/by-difficulty|Browse by Difficulty]]
- [[index/by-topics|Browse by Topics]]
- [[index/reading-paths|Learning Paths]]
### Other Categories
- [[AI Development & Agents/⌂ AI Development & Agents|AI Development & Agents]]
- [[Cutting-Edge AI/⌂ Cutting-Edge AI|Cutting-Edge AI]]
- [[Practical Applications/⌂ Practical Applications|Practical Applications]]
- [[Emerging Trends/⌂ Emerging Trends|Emerging Trends]]
### Home
- [[⌂ Home|Back to Home]]